Input

Build and Run Commands

Local or AWS

git clone https://github.com/SWOT-Confluence/prediagnostics.git

cd prediagnostics

docker build -t prediagnostics .

—————-docker run -v /mnt/input:/mnt/data priors -i 0 -r unconstrained -p usgs riggs gbpriors -l 000 -g————-

HPC

singularity build prediagnostics.simg docker://travissimmons/prediagnostics

singularity run –bind mnt/input:/mnt/data/input,mnt/diagnostics/prediagnostics:/mnt/data/output prediagnostics.simg 1 reaches.json

Arguments

option_list <- list( make_option(c(“-i”, “–index”), type = “integer”, default = NULL, help = “Index to run on”), make_option(c(“-b”, “–config_bucket”), type = “character”, default = “”, help = “Bucket key to find the sos”), make_option(c(“-r”, “–reaches_json”), type = “character”, default = “reaches.json”, help = “Name of reaches.json”) )

Dev notes….

Had to turn of hydat and upload functions in order to get it running, need to make an hpc or offline flag…not currently on a branch…