Input
Build and Run Commands
Local or AWS
git clone https://github.com/SWOT-Confluence/momma.git
cd momma
docker build -t momma .
HPC
singularity build postd-moi.simg docker://travissimmons/postd-moi
singularity run –bind mnt/input:/mnt/data/input,mnt/flpe:/mnt/data/flpe,mnt/diagnostics/postdiagnostics/reach:/mnt/data/output,mnt/output/sos:/mnt/data/results postd-moi.simg -r reaches.json -t 0.25 -i 0 -l True
Arguments
option_list <- list( make_option(c(“-i”, “–index”), type = “integer”, default = NULL, help = “Index to run on”), make_option(c(“-t”, “–tolerance”), type = “integer”, default = 0.25, help = “Tolerance value for stability check”), make_option(c(“-b”, “–current_bucket”), type = “character”, default = “”, help = “Bucket key to find the sos”), make_option(c(“-r”, “–reaches_json”), type = “character”, default = “reaches.json”, help = “Name of reaches.json”), make_option(c(“-l”, “–local_bool”), type = “logical”, default = FALSE, help = “Name of reaches.json”), make_option(c(“-p”, “–previous_bucket”), type = “character”, default = “confluence-sos”, help = “Name of SoS bucket to pull previous results”) )